7 Challenges of Manual Invoice Processing

Portrait of Neha Gunnoo
by Neha Gunnoo
6 mins read
Last updated on

Despite technological advancements, many businesses still rely heavily on manual invoice processing. While this traditional approach might seem straightforward, it comes with significant hidden costs, inefficiencies, and potential risks.

This article examines the challenges of manual invoice processing in depth, supported by relevant statistics and real-world examples.

The hidden costs of manual invoice processing

Manual invoice processing is more expensive and less efficient than many businesses realize. According to Levvel Research, manually processing a single invoice can cost between $10 to $15, significantly impacting operational budgets. These costs are driven by:

  • Employee labor and administrative overhead
  • Delays due to physical routing and manual approval processes
  • Human errors that require corrections and audits

Common Challenges in Manual Invoice Processing

Struggling with slow, error-prone invoice processing? You’re not alone.

Paper-based invoicing is a time-consuming, costly, and error-prone task that slows down accounts payable (AP) teams and disrupts cash flow. Studies show that 20% of invoices contain discrepancies, requiring additional time and resources. (Paymerang)

1. High processing costs

Traditional invoice management incurs significant printing, paper, storage, postage, and labor costs. Manual invoicing involves repetitive tasks such as manual data entry, verification, and physical invoice routing. These labor-intensive tasks consume valuable employee time and inflate costs.

2. Slow processing & approval delays

Invoices require multiple approvals, often moving between departments via email or physical documents. This causes delays, impacting payment cycles and supplier relationships.

3. Human errors & duplicate invoices

Manual data entry leads to typos, incorrect amounts, and duplicate invoices, increasing the risk of overpayments and disputes.

Studies show that businesses experience an error rate of 1–2% on all invoices processed manually, highlighting the widespread nature of these issues. (Stampli)

4. Compliance & tax risks

Manual processes lack automated validation checks, increasing the likelihood of compliance failures related to VAT, GST, or other regulatory standards.  Businesses risk regulatory fines and financial discrepancies without audit trails or automated tax validation.

5. Lack of visibility & tracking

Manually processed invoices lack real-time tracking, making it difficult for finance teams to monitor payment status and cash flow.

6. Increased risk of invoice fraud

Paper-based invoice handling lacks built-in security checks, making it easier for fake invoices, duplicate payments, and unauthorized transactions to go unnoticed. Without automated validation, businesses may struggle to detect fraudulent activity before it causes financial damage.

7. Supplier relationship strain

Late payments due to processing delays, misplaced invoices, or human errors can negatively impact vendor trust. Suppliers rely on timely payments to maintain operations, and repeated delays may lead to strained relationships, higher costs, or even the loss of key partnerships.

Real-World Examples: Manual Invoice Processing Pitfalls

Time-consuming invoice workflows are full of challenges that can lead to significant operational and financial setbacks. Real-world examples highlight the detrimental effects of relying on manual methods for accounts payable.

Case study 1: Late payments and vendor relationship strain

A mid-sized retail company processed over 5,000 invoices monthly using manual methods. Due to the time-intensive nature of manual data entry and multi-level approvals (49% of businesses require at least two people for approval), the company frequently missed payment deadlines. (Skynova)

This resulted in:

  • Late payment penalties amounting to $50,000 annually.
  • Strained relationships with key vendors, leading to reduced credit terms.

Case study 2: Compliance failures and audit risks

A manufacturing firm faced compliance issues due to lost paper invoices and human errors during manual entry. With 57% of invoice data requiring manual input, discrepancies in tax calculations went unnoticed until an external audit revealed violations. (Skynova)

Consequences included:

  • A $100,000 fine for non-compliance with tax regulations.
  • Damaged reputation with stakeholders.

Manual Invoice Processing Process

The key steps involved are:

  1. Invoice Receipt: Invoices arrive via mail, fax, email, or courier.
  2. Manual Data Entry: Employees manually key invoice details into accounting systems.
  3. Routing and Approval: Physical or email routing of invoices for review and approval.
  4. Matching and Verification: Matched invoices with purchase orders and delivery receipts.
  5. Invoice Filing and Archiving: Physical filing or digital storage without easy retrieval mechanisms.
  6. Payment Issuance: Checks or manual bank transfers are prepared individually.

How to reduce the cost of manual invoice processing

Reducing the cost of invoice processing is a critical priority for businesses aiming to optimize their financial operations. Traditional manual methods can cost anywhere from $10 to $30 per invoice, driven by labor, errors, and inefficiencies. (Stampli). In contrast, automation can cut these costs by up to 80%, bringing expenses down to as little as $2 per invoice. (Moon Invoice)

1. Standardize invoice formats & workflows

  • Implement a structured invoice approval process to minimize errors.
  • Require vendors to use electronic invoices to reduce manual handling.

2. Digitize & centralize invoice management

  • Use cloud-based invoicing systems to store and track invoices.
  • Ensure real-time visibility for finance teams.

3. Automate invoice capture

4. Reduce paper-based invoicing

  • Switch to e-invoicing to eliminate printing and postage costs.

5. Implement early payment discounts & vendor portals

  • Offer suppliers early payment discounts to save costs.
  • Use a self-service vendor portal to reduce invoice inquiries.

While only 9% of AP departments are fully automated today, two-thirds of finance professionals expect their AP processes to be fully automated by 2025. (Netsuite)

It's Time to Automate Invoice Processing

Switching from manual to automated invoice processing isn't just beneficial—it's essential for modern businesses seeking to improve accuracy, reduce costs, and enhance financial control.

Ready to automate your invoice processes? Explore how Parseur can streamline your Accounts Payable today.

“I was looking for a solution that would allow me to extract invoice and contract information directly from PDFs. I have tried different applications, but the one I liked the most was Parseur. Parseur was the most complete, the one that got the best recognition text, and the one that seemed most professional.” - Jesús P. de Vicente, Manager at eldormitorio

FAQs on Manual Invoice Processing

Why is manual invoice processing costly?

Manual processing involves significant administrative labor, high error rates, and storage costs, increasing overall expenses.

How does automation reduce invoice errors?

Automation eliminates human entry, significantly reducing common mistakes like duplication, typos, and incorrect amounts.

What are the common signs of invoice fraud?

Frequent duplicate invoices, discrepancies in vendor information, and unexpected invoice volume spikes are signs of potential fraud.

What is the ROI of invoice automation?

Businesses typically see up to 80% cost reductions, faster invoice processing, and improved compliance, making automation highly cost-effective.

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